There are some sweet options out there for adding a trunk to your bike, but if you're looking to save some cash or just feeling inventive, try this alternative from Instructables. Using a plastic toolbox as the foundation gives you a cheap, durable starting point, and lets you create different trunks for different purposes:
A small weekend trunk for fun rides
A larger commuter trunk with room for a change of clothes.
A "Good Samaritan" trunk, with a set of tools for helping other cyclists in a group ride.
As bicycles become more popular this year, the five-finger supply chain is working hard to keep their "inventory" fully stocked. If you're a daily commuter, you're that much more exposed, especially if you commute to a location in the city.
They say that no lock is truly theft-proof, but that's not really the point. Your locking set-up simply has to be more difficult than the next guy's. Thieves don't enjoy working hard, and will walk right past your Fort-Knox'ed Bianchi to grab that Schwinn with the Walmart cable.
So for the ultimate in visual and physical deterrents, try this: Grab a couple of these Master Lock U-Locks and cable-tie the U and lock portions together. Set the combinations to match as well. The result: the thief now has two locks to cut, while sparing you some of the annoyance of fumbling with two separate locks.
The design of this particular U-lock makes this easy, because the combination numbers are on the bottom of the cylinder, so they'll be right next to each other when you're ready to get going.